Visualize the p-p network

Heatmap

heatmaply(net, scale="column")

Matrix plot

#interaction matrix plot
visweb(net, type="nested", circles=T, boxes=F, circle.max=1.2)

Web plot

#interaction web plot
plotweb(net, text.rot=90, method="cca", col.high=pal[2], col.low=pal[1], col.interaction=pal[3])

Network topography

networklevel(net)
                         connectance                     web asymmetry 
                          0.06312657                        0.63106796 
                   links per species            number of compartments 
                          1.95631068                        2.00000000 
               compartment diversity               cluster coefficient 
                          1.07901412                        0.02631579 
                          nestedness               weighted nestedness 
                          4.48059576                        0.58672881 
                       weighted NODF    interaction strength asymmetry 
                         10.80348739                        0.20372363 
            specialisation asymmetry                   linkage density 
                         -0.04424002                        3.57255189 
                weighted connectance                      Fisher alpha 
                          0.01734248                       89.61252715 
                   Shannon diversity              interaction evenness 
                          3.27629195                        0.37393976 
        Alatalo interaction evenness                                H2 
                          0.25285628                        0.57919894 
                number.of.species.HL              number.of.species.LL 
                        168.00000000                       38.00000000 
   mean.number.of.shared.partners.HL mean.number.of.shared.partners.LL 
                          0.34944397                        1.18776671 
              cluster.coefficient.HL            cluster.coefficient.LL 
                          0.34062967                        0.21733898 
     weighted.cluster.coefficient.HL   weighted.cluster.coefficient.LL 
                          0.72421977                        0.31277076 
                    niche.overlap.HL                  niche.overlap.LL 
                          0.12366249                        0.14889538 
                     togetherness.HL                   togetherness.LL 
                          0.03019814                        0.02302573 
                          C.score.HL                        C.score.LL 
                          0.75923950                        0.74100046 
                          V.ratio.HL                        V.ratio.LL 
                          3.23242952                       17.02718828 
                      discrepancy.HL                    discrepancy.LL 
                        248.00000000                      250.00000000 
                 extinction.slope.HL               extinction.slope.LL 
                          5.03260774                        1.60178636 
                       robustness.HL                     robustness.LL 
                          0.81123903                        0.61539429 
       functional.complementarity.HL     functional.complementarity.LL 
                       8044.31456516                     7651.23911634 
                partner.diversity.HL              partner.diversity.LL 
                          0.94103312                        1.28483306 
                       generality.HL                  vulnerability.LL 
                          2.67434342                        4.47076037